CRG Viral Beacon - Multi Variant Query
Enabled by data from 
Lineage A
8782 C > T; 28144 T > C
Lineage A.1
17747 C > T; 17858 A > G; 18060 C > T
Lineage A.2
9477 T > A; 14805 C > T; 25979 G > T; 28657 C > T; 28863 C > T
Lineage B.1
241 C > T; 3037 C > T; 14408 C > T; 23403 A > G
Lineage B.1.1
28881 G > A; 28882 G > A; 28883 G > C
Lineage B.2
11083 G > T; 14805 C > T; 26144 G > T
*Pangolin lineages extracted from Tegally, H., Wilkinson, E., Lessells, R.J. et al. Sixteen novel lineages of SARS-CoV-2 in South Africa. Nat Med 27, 440–446 (2021).
Lineage A
S2839 ORF1ab; L84S ORF8
Lineage A.1
P5828L ORF1ab; Y5865C ORF1ab; L5932 ORF1ab
Lineage A.2
F3071Y ORF1ab; Y4847 ORF1ab; G196V ORF3a; D128 N; S197L N
Lineage B.1.1
R203K N; R203 N; G204R N
Lineage B.2
L3606F ORF1ab; Y4847 ORF1ab; G251V ORF3a
*Pangolin lineages extracted from Tegally, H., Wilkinson, E., Lessells, R.J. et al. Sixteen novel lineages of SARS-CoV-2 in South Africa. Nat Med 27, 440–446 (2021).
| Variant Annotation | Variant Frequency per Dataset | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position | Type | Ref. | Alt. | gene region | effect | functional class | locus name | locus id | aminoacid change | ENA-Illumina | ENA-ONT | ENA-Consensus | ||
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Metadata
| frequency per run | host age | host sex | geo origin | dataset | disease | sample type | collection date | platform | run id | bioproject accession | sample id | JBrowse | strain id |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Results plots
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Frequency tracking
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